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Mafft is installed and in PATH.
I deleted the original bin/roary from previous install too.
It looks like the FASTA file comparison fails - lower case vs uppercase?
t/Bio/Roary/CommandLine/QueryRoary.t .................... ok
t/Bio/Roary/CommandLine/Roary.t ......................... 46/? Unknown option: mafft
Unknown option: mafft
Unknown option: mafft
Unknown option: mafft
t/Bio/Roary/CommandLine/Roary.t ......................... 48/?
# Failed test 'Actual and expected output match for '-j Local --dont_delete_files --dont_split_groups --output_multifasta_files --mafft --dont_delete_files t/data/real_data_1.gff t/data/real_data_2.gff''
# at t/lib/TestHelper.pm line 75.
# +---+--------------------------------------------------------------+--------------------------------------------------------------+
# | |Got |Expected |
# | Ln| | |
# +---+--------------------------------------------------------------+--------------------------------------------------------------+
# | 1|>11111_1#11_04119 |>11111_1#11_04119
# * 2|ATGAATAAAACAACTGAGTATATTGACGCACTGCTGCTTTCTGAACGTGAGAAAGCGGCA |atgaataaaacaactgagtatattgacgcactgctgctttctgaacgtgagaaagcggca *```
Test Summary Report
-------------------
t/Bio/Roary/CommandLine/Roary.t (Wstat: 256 Tests: 50 Failed: 1)
Failed test: 49
Non-zero exit status: 1
Files=48, Tests=704, 140 wallclock secs ( 0.17 usr 0.05 sys + 73.77 cusr 26.66 csys = 100.65 CPU)
Result: FAIL
Failed 1/48 test programs. 1/704 subtests failed.
make: *** [test_dynamic] Error 255
AJPAGE/Bio-Roary-3.2.4.tar.gz
/bin/make test -- NOT OK
//hint// to see the cpan-testers results for installing this module, try:
reports AJPAGE/Bio-Roary-3.2.4.tar.gz
Stopping: 'install' failed for 'Bio::Roary'.
Failed during this command:
AJPAGE/Bio-Roary-3.2.4.tar.gz : make_test NO
The text was updated successfully, but these errors were encountered:
Mafft is installed and in PATH.
I deleted the original bin/roary from previous install too.
It looks like the FASTA file comparison fails - lower case vs uppercase?
The text was updated successfully, but these errors were encountered: