Bundle Specific Tractography pipeline

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Run the Bundle Specific Tractography pipeline. To access the template in the original publication: https://zenodo.org/record/4104309#.X4xduZ1KhdU

If you use this pipeline, please cite:

Rheault, Francois, et al. "Bundle-specific tractography with incorporated
anatomical and orientational priors." NeuroImage 186 (2019)
https://doi.org/10.1016/j.neuroimage.2018.11.018

Kurtzer GM, Sochat V, Bauer MW Singularity: Scientific containers for
mobility of compute. PLoS ONE 12(5): e0177459 (2017)
https://doi.org/10.1371/journal.pone.0177459

P. Di Tommaso, et al. Nextflow enables reproducible computational workflows.
Nature Biotechnology 35, 316–319 (2017) https://doi.org/10.1038/nbt.3820

Requirements

• Nextflow
• scilpy
• ants

Usage

See USAGE or run nextflow run main.nf --help