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Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/home/sturm/anaconda3/envs/test_scanpy_tqdm/lib/python3.8/site-packages/scanpy/__init__.py", line 39, in <module>from . import datasets, logging, queries, external, get
File "/home/sturm/anaconda3/envs/test_scanpy_tqdm/lib/python3.8/site-packages/scanpy/datasets/__init__.py", line 3, in <module>from ._datasets import (
File "/home/sturm/anaconda3/envs/test_scanpy_tqdm/lib/python3.8/site-packages/scanpy/datasets/_datasets.py", line 8, in <module>from tqdm.auto import tqdm
ModuleNotFoundError: No module named 'tqdm.auto'
When an old version of tqdm (< 4.29.1) is installed, scanpy cannot be imported.
conda create -n test_scanpy_tqdm scanpy=1.5.1 tqdm=4.19.4 conda activate test_scanpy_tqdm python -c "import scanpy as sc"
Suggested solution
Either
tqdm>=4.29.1
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