Community-maintained list of resources that the CI4CC organization and the larger cancer informatics community have found useful or are developing.
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HOW_TO_CONTRIBUTE.md
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README.md

README.md

ci4cc-informatics-resources

This is a community-maintained list of resources that the CI4CC organization and larger cancer informatics have found useful or are developing. Contributions welcome...

Clinical Trials

Databases and APIs

Policies and Standards

Cancer Registries

Databases and APIs

  • SEER - The Surveillance, Epidemiology, and End Results (SEER) Program of the National Cancer Institute provides information on cancer statistics in an effort to reduce the cancer burden among the U.S. population. - [Database, API]

Data Engineering and Analytics

Natural Language Processing

  • Apache cTAKES - Apache cTAKES™ is a natural language processing system for extraction of information from electronic medical record clinical free-text. - [OSS]

Analytics

Image Informatics

  • 3D Slicer - 3D Slicer is an extensible open source software platform for medical image informatics, image processing, and three-dimensional visualization. - [Imaging, OSS]
  • dcmqi - DICOM for Quantitative Imaging (dcmqi) is a free, open source library that implements conversion of the quantitative imaging analysis results stored in commonly used research formats into the standard DICOM representation. - [Imaging, OSS, Standards]

Data Platforms

Genomics

Clinical

Data Sharing and Open Data Efforts

Genomics