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iGenVar - Modularisation of iGenVar #44

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Irallia opened this issue Jan 20, 2021 · 0 comments · Fixed by #79
Closed
5 tasks done

iGenVar - Modularisation of iGenVar #44

Irallia opened this issue Jan 20, 2021 · 0 comments · Fixed by #79
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@Irallia
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Irallia commented Jan 20, 2021 •
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We want to modularise the different parts of IGenVar so that the user can decide which methods to use and so that we can compare different combinations of methods more easily. This also gives us the possibility to easily add a module to IGenVar, e.g. a new cluster method.

This affects

  • Input Data
  • methods for detecting junctions
  • methods for clustering junctions
  • methods for refining breakends
  • move everything into different directories
@Irallia Irallia added the Epic label Jan 20, 2021
This was referenced Mar 1, 2021
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@Irallia Irallia mentioned this issue Mar 30, 2021
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Irallia pushed a commit to Irallia/iGenVar that referenced this issue May 10, 2021
@marehr
Merge pull request seqan#44 from eseiler/fix/bintray
d54a41d 
[FIX] using old homebrew version
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[FEATURE] modularisation input Irallia/iGenVar
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