Delete get_gene_exp.py #88
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| name: CI on macOS | |
| on: | |
| push: | |
| branches: | |
| - 'master' | |
| - 'main' | |
| pull_request: | |
| concurrency: | |
| group: macos-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| CMAKE_VERSION: 3.10.3 | |
| SEQAN3_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -ex {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.name }} | |
| runs-on: macos-12 | |
| timeout-minutes: 120 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| include: | |
| - name: "gcc12" | |
| cxx: "g++-12" | |
| cc: "gcc-12" | |
| build_type: Release | |
| - name: "gcc11" | |
| cxx: "g++-11" | |
| cc: "gcc-11" | |
| build_type: Release | |
| - name: "gcc10" | |
| cxx: "g++-10" | |
| cc: "gcc-10" | |
| build_type: Release | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: needle | |
| fetch-depth: 2 | |
| submodules: recursive | |
| - name: Configure Homebrew | |
| uses: Homebrew/actions/setup-homebrew@master | |
| - name: Install CMake | |
| run: bash ./needle/lib/seqan3/.github/workflows/scripts/install_cmake.sh | |
| - name: Install ccache | |
| run: bash ./needle/lib/seqan3/.github/workflows/scripts/install_via_brew.sh ccache | |
| - name: Install compiler ${{ matrix.cxx }} | |
| run: bash ./needle/lib/seqan3/.github/workflows/scripts/install_via_brew.sh gcc $(echo "${{ matrix.cxx }}" | sed "s/g++-//g") | |
| - name: Load ccache | |
| uses: actions/cache@v3 | |
| with: | |
| path: .ccache | |
| key: ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }}-${{ github.run_number }} | |
| # Restoring: From current branch, otherwise from base branch, otherwise from any branch. | |
| restore-keys: | | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache-${{ github.base_ref }} | |
| ${{ runner.os }}-${{ matrix.name }}-ccache- | |
| - name: Tool versions | |
| run: | | |
| env cmake --version | |
| env ${{ matrix.cxx }} --version | |
| sudo xcode-select -s '/Applications/Xcode_13.4.1.app/Contents/Developer' # https://github.com/actions/runner-images/issues/6350 | |
| - name: Configure tests | |
| env: | |
| CXX: ${{ matrix.cxx }} | |
| CC: ${{ matrix.cc }} | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake ../needle -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }} -Wno-interference-size" | |
| - name: Build application | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| CCACHE_MAXSIZE: 500M | |
| run: | | |
| ccache -p || true | |
| cd build | |
| make -k -j3 | |
| ccache -s || true | |
| - name: Build and run tests | |
| env: | |
| CCACHE_BASEDIR: ${{ github.workspace }} | |
| CCACHE_DIR: ${{ github.workspace }}/.ccache | |
| CCACHE_COMPRESS: true | |
| CCACHE_COMPRESSLEVEL: 6 | |
| CCACHE_MAXSIZE: 500M | |
| run: | | |
| cd build | |
| ctest . -j3 --output-on-failure |