Latest Libraries #46
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| # SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin | |
| # SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik | |
| # SPDX-License-Identifier: CC0-1.0 | |
| name: Latest Libraries | |
| on: | |
| # Will always run on the default branch | |
| schedule: | |
| - cron: "0 4 * * SUN" | |
| # Enables a manual trigger, may run on any branch | |
| workflow_dispatch: | |
| concurrency: | |
| group: libs-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| SEQAN3_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| ISSUE: 2747 # Issue number to use for reporting failures | |
| defaults: | |
| run: | |
| shell: bash -Eexuo pipefail {0} | |
| jobs: | |
| build: | |
| name: ${{ matrix.build }} gcc${{ matrix.compiler }} | |
| runs-on: ubuntu-22.04 | |
| timeout-minutes: 300 | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: [11, 12, 13] | |
| build: [unit, snippet, performance, header] | |
| include: | |
| - compiler: 12 | |
| build: unit | |
| cxx_flags: "-Wno-restrict" # Bogus errors in gtest that won't be fixed upstream | |
| steps: | |
| - name: Checkout SeqAn3 | |
| uses: actions/checkout@v4 | |
| with: | |
| path: seqan3 | |
| submodules: true | |
| - name: Update all submodules | |
| run: | | |
| cd seqan3 | |
| git submodule status | |
| git submodule update --recursive --remote | |
| git submodule status | |
| - name: Update googletest | |
| run: | | |
| grep 'SEQAN3_GTEST_TAG ".*"' seqan3/test/cmake/seqan3_require_test.cmake | |
| sed -i 's/SEQAN3_GTEST_TAG ".*"/SEQAN3_GTEST_TAG "main"/' seqan3/test/cmake/seqan3_require_test.cmake | |
| grep 'SEQAN3_GTEST_TAG ".*"' seqan3/test/cmake/seqan3_require_test.cmake | |
| - name: Update googlebenchmark | |
| run: | | |
| grep 'SEQAN3_BENCHMARK_TAG ".*"' seqan3/test/cmake/seqan3_require_benchmark.cmake | |
| sed -i 's/SEQAN3_BENCHMARK_TAG ".*"/SEQAN3_BENCHMARK_TAG "main"/' seqan3/test/cmake/seqan3_require_benchmark.cmake | |
| grep 'SEQAN3_BENCHMARK_TAG ".*"' seqan3/test/cmake/seqan3_require_benchmark.cmake | |
| - name: Checkout SeqAn2 | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: seqan/seqan | |
| path: seqan3/submodules/seqan | |
| - name: Setup compiler | |
| uses: seqan/actions/setup-compiler@main | |
| with: | |
| compiler: gcc-${{ matrix.compiler }} | |
| - name: Install CMake | |
| uses: seqan/actions/setup-cmake@main | |
| with: | |
| cmake: 3.16.9 | |
| - name: Configure tests | |
| run: | | |
| mkdir seqan3-build | |
| cd seqan3-build | |
| cmake ../seqan3/test/${{ matrix.build }} -DCMAKE_BUILD_TYPE=Release \ | |
| -DCMAKE_CXX_FLAGS="${{ matrix.cxx_flags }}" \ | |
| -DSEQAN3_VERBOSE_TESTS=OFF \ | |
| -DSEQAN3_BENCHMARK_MIN_TIME=0.01 | |
| case "${{ matrix.build }}" in | |
| unit) make -j2 gtest_build;; | |
| snippet) make -j2 gtest_build;; | |
| performance) make -j2 gbenchmark_build;; | |
| header) make -j2 gtest_build gbenchmark_build;; | |
| esac | |
| - name: Build tests | |
| run: | | |
| cd seqan3-build | |
| make -k -j2 2>&1 | tee build.log | |
| - name: Setup Python | |
| if: ${{ failure() }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.x' | |
| - name: Process Log | |
| if: ${{ failure() }} | |
| run: | | |
| FILE="seqan3/.github/ISSUE_TEMPLATE/cron_comment_template.md" | |
| python3 seqan3/.github/workflows/scripts/process_compiler_error_log.py seqan3-build/build.log >> $FILE | |
| - name: Create comment body | |
| if: ${{ failure() }} | |
| id: comment-body | |
| run: | | |
| FILE="seqan3/.github/ISSUE_TEMPLATE/cron_comment_template.md" | |
| URL="$GITHUB_SERVER_URL/$GITHUB_REPOSITORY/actions/runs/$GITHUB_RUN_ID" | |
| sed -i "s@{{ build }}@${{ matrix.build }}@" $FILE | |
| sed -i "s@{{ compiler }}@${{ matrix.compiler }}@" $FILE | |
| sed -i "s@{{ url }}@$URL@" $FILE | |
| echo "body<<EOF" >> $GITHUB_OUTPUT | |
| cat $FILE >> $GITHUB_OUTPUT | |
| echo "EOF" >> $GITHUB_OUTPUT | |
| - name: Reopen issue | |
| if: ${{ failure() }} | |
| uses: octokit/request-action@v2.x | |
| with: | |
| route: PATCH /repos/{owner}/{repo}/issues/{issue_number} | |
| owner: ${{ github.repository_owner }} | |
| repo: seqan3 | |
| issue_number: ${{ env.ISSUE }} | |
| state: "open" | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Create comment | |
| if: ${{ failure() }} | |
| uses: peter-evans/create-or-update-comment@v4 | |
| with: | |
| issue-number: ${{ env.ISSUE }} | |
| body: ${{ steps.comment-body.outputs.body }} | |