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Troubleshooting

Thomas Cokelaer edited this page Jul 28, 2020 · 3 revisions

General issue related to Sequana

Please see the official documentation of the Sequana projects: https://sequana.readthedocs.io/en/master/faqs.html

Issue related to the pipeline itself

out of memory (multiqc step)

In general, a 4Gb memory is enough to analyse most experiments. Yet, on recent very large runs with 700 samples, we had memory issue when using multiqc plugin v1.9 . We had to increase the memory to 128Gb. This is unfortunate and will probably be fixed in future version but is independent of the pipeline for now.