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fix: Detect pandas availability to select serializer #2300

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merged 5 commits into from Jun 16, 2023

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DrYak
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@DrYak DrYak commented Jun 14, 2023

Description

  • previous try catch solution wasn't triggered
  • use detecting availability of the module instead

QC

  • The PR contains a test case for the changes or the changes are already covered by an existing test case.
  • The documentation (docs/) is updated to reflect the changes or this is not necessary (e.g. if the change does neither modify the language nor the behavior or functionalities of Snakemake).

- previous try catch solution wasn't triggered
@DrYak DrYak changed the title Detect pandas availability to select serializer fix: Detect pandas availability to select serializer Jun 14, 2023
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sonarcloud bot commented Jun 15, 2023

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

No Coverage information No Coverage information
0.0% 0.0% Duplication

@DrYak
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DrYak commented Jun 15, 2023

for a potential test, see this Discord post but I would need the help of someone more fulent into the CI/CD infrastructure of snakemake to guide me.

@johanneskoester johanneskoester merged commit e08a771 into snakemake:main Jun 16, 2023
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johanneskoester pushed a commit that referenced this pull request Jun 16, 2023
🤖 I have created a release *beep* *boop*
---


##
[7.28.3](v7.28.2...v7.28.3)
(2023-06-16)


### Bug Fixes

* Detect pandas availability to select serializer
([#2300](#2300))
([e08a771](e08a771))


### Performance Improvements

* avoid superflous mtime checks when the same file is referred to by
multiple jobs
([#2284](#2284))
([eb6e2e1](eb6e2e1))


### Documentation

* update docs for azbatch and dockerhub ref
([#2298](#2298))
([908dbf1](908dbf1))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
vsoch pushed a commit to vsoch/snakemake that referenced this pull request Jun 20, 2023
### Description

- previous try catch solution wasn't triggered
- use detecting availability of the module instead

### QC
<!-- Make sure that you can tick the boxes below. -->

* [ ] The PR contains a test case for the changes or the changes are
already covered by an existing test case.
* [x] The documentation (`docs/`) is updated to reflect the changes or
this is not necessary (e.g. if the change does neither modify the
language nor the behavior or functionalities of Snakemake).

---------

Co-authored-by: Johannes Köster <johannes.koester@tu-dortmund.de>
Co-authored-by: Johannes Köster <johannes.koester@uni-due.de>
vsoch pushed a commit to vsoch/snakemake that referenced this pull request Jun 20, 2023
🤖 I have created a release *beep* *boop*
---


##
[7.28.3](snakemake/snakemake@v7.28.2...v7.28.3)
(2023-06-16)


### Bug Fixes

* Detect pandas availability to select serializer
([snakemake#2300](snakemake#2300))
([e08a771](snakemake@e08a771))


### Performance Improvements

* avoid superflous mtime checks when the same file is referred to by
multiple jobs
([snakemake#2284](snakemake#2284))
([eb6e2e1](snakemake@eb6e2e1))


### Documentation

* update docs for azbatch and dockerhub ref
([snakemake#2298](snakemake#2298))
([908dbf1](snakemake@908dbf1))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
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2 participants