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fix: use default group settings if not execution workflow (fixes attribute error occurring with --report) #2617

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merged 3 commits into from Jan 15, 2024
Merged

fix: use default group settings if not execution workflow (fixes attribute error occurring with --report) #2617

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c4e7f4b
fix: use default group settings if not execution workflow
johanneskoester Jan 15, 2024
e124c66
dbg
johanneskoester Jan 15, 2024
46a82f6
fix
johanneskoester Jan 15, 2024
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4 changes: 4 additions & 0 deletions snakemake/api.py
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Expand Up @@ -379,6 +379,10 @@ def _workflow(self):
def _get_workflow(self, **kwargs):
from snakemake.workflow import Workflow

if "group_settings" not in kwargs:
# just init with defaults, can be overwritten later
kwargs["group_settings"] = GroupSettings()

return Workflow(
config_settings=self.config_settings,
resource_settings=self.resource_settings,
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