Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Fix hmmlist parameter in nextflow_schema.json #37

Merged
merged 2 commits into from
Jun 20, 2023
Merged

Fix hmmlist parameter in nextflow_schema.json #37

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
6767c38
Fix hmmlist parameter in nextflow_schema.json
robsyme Jun 20, 2023
3056ae9
Prettier check
robsyme Jun 20, 2023
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
22 changes: 9 additions & 13 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,31 +2,27 @@

## [0.0.3](https://github.com/socialgene/sgnf/compare/v0.0.2...v0.0.3) (2023-06-17)


### Bug Fixes

* add curl to minimal docker image ([0c5d47b](https://github.com/socialgene/sgnf/commit/0c5d47b6fa449fed67d4ce74aada9e503556b591))
* antismash docker call ([2abe262](https://github.com/socialgene/sgnf/commit/2abe262757a5040eebf8dc0c7f659f0f03a7ea7d))
- add curl to minimal docker image ([0c5d47b](https://github.com/socialgene/sgnf/commit/0c5d47b6fa449fed67d4ce74aada9e503556b591))
- antismash docker call ([2abe262](https://github.com/socialgene/sgnf/commit/2abe262757a5040eebf8dc0c7f659f0f03a7ea7d))

## [0.0.2](https://github.com/socialgene/sgnf/compare/v0.0.1...v0.0.2) (2023-06-16)


### Bug Fixes

* change ncbi-genome-download docker ([295606b](https://github.com/socialgene/sgnf/commit/295606b66ee1ec861ba5eff6c71b6197b5ccdcd4))
* loosen accessory version pins in sgpy base docker ([ca94c3e](https://github.com/socialgene/sgnf/commit/ca94c3ec0cda3556fab7eb7d4cbef58d5b8bfbe8))
* ncbi-genome-download error ([f881373](https://github.com/socialgene/sgnf/commit/f881373cdd1bf3cf68c65cd2962e13e4b82a1834))
* socialgene is now on PyPI ([82af357](https://github.com/socialgene/sgnf/commit/82af3575e07ca8ddd5949640672f6205f74a2402))
- change ncbi-genome-download docker ([295606b](https://github.com/socialgene/sgnf/commit/295606b66ee1ec861ba5eff6c71b6197b5ccdcd4))
- loosen accessory version pins in sgpy base docker ([ca94c3e](https://github.com/socialgene/sgnf/commit/ca94c3ec0cda3556fab7eb7d4cbef58d5b8bfbe8))
- ncbi-genome-download error ([f881373](https://github.com/socialgene/sgnf/commit/f881373cdd1bf3cf68c65cd2962e13e4b82a1834))
- socialgene is now on PyPI ([82af357](https://github.com/socialgene/sgnf/commit/82af3575e07ca8ddd5949640672f6205f74a2402))

## 0.0.1 (2023-06-15)


### Bug Fixes

* fixing lint ([31e4c0f](https://github.com/socialgene/sgnf/commit/31e4c0f1ee608b2216856014b092ef3fc8f1393a))
* reset release please ([b22acbb](https://github.com/socialgene/sgnf/commit/b22acbba3606e3eda124083d048067ed139e2bc8))

- fixing lint ([31e4c0f](https://github.com/socialgene/sgnf/commit/31e4c0f1ee608b2216856014b092ef3fc8f1393a))
- reset release please ([b22acbb](https://github.com/socialgene/sgnf/commit/b22acbba3606e3eda124083d048067ed139e2bc8))

### Miscellaneous Chores

* release 0.0.1 ([9d1cf65](https://github.com/socialgene/sgnf/commit/9d1cf65873f05cbbe7fb00a986780678f5a5d704))
- release 0.0.1 ([9d1cf65](https://github.com/socialgene/sgnf/commit/9d1cf65873f05cbbe7fb00a986780678f5a5d704))
16 changes: 14 additions & 2 deletions nextflow_schema.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -83,8 +83,20 @@
"description": "File path of a custom HMMER hmm file"
},
"hmmlist": {
"type": "array",
"description": "[\"all\"] or some combination of [\"antismash\",\"amrfinder\",\"bigslice\",\"classiphage\",\"pfam\",\"prism\",\"resfams\",\"tigrfam\",\"virus_orthologous_groups\"]"
"type": "string",
"description": "'all' or some combination of 'antismash', 'amrfinder', 'bigslice', 'classiphage','pfam', 'prism', 'resfams', 'tigrfam', 'virus_orthologous_groups'",
"enum": [
"all",
"antismash",
"amrfinder",
"bigslice",
"classiphage",
"pfam",
"prism",
"resfams",
"tigrfam",
"virus_orthologous_groups"
]
},
"domtblout_path": {
"type": "string",
Expand Down
4 changes: 1 addition & 3 deletions release-please-config.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,9 +7,7 @@
"bump-patch-for-minor-pre-major": true,
"draft": false,
"prerelease": false,
"extra-files": [
"nextflow.config"
]
"extra-files": ["nextflow.config"]
}
},
"$schema": "https://raw.githubusercontent.com/googleapis/release-please/main/schemas/config.json",
Expand Down