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Fix hmmlist parameter in nextflow_schema.json #37

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merged 2 commits into from
Jun 20, 2023
Merged

Fix hmmlist parameter in nextflow_schema.json #37

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6767c38
Fix hmmlist parameter in nextflow_schema.json
robsyme Jun 20, 2023
3056ae9
Prettier check
robsyme Jun 20, 2023
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22 changes: 9 additions & 13 deletions CHANGELOG.md
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Expand Up @@ -2,31 +2,27 @@

## [0.0.3](https://github.com/socialgene/sgnf/compare/v0.0.2...v0.0.3) (2023-06-17)


### Bug Fixes

* add curl to minimal docker image ([0c5d47b](https://github.com/socialgene/sgnf/commit/0c5d47b6fa449fed67d4ce74aada9e503556b591))
* antismash docker call ([2abe262](https://github.com/socialgene/sgnf/commit/2abe262757a5040eebf8dc0c7f659f0f03a7ea7d))
- add curl to minimal docker image ([0c5d47b](https://github.com/socialgene/sgnf/commit/0c5d47b6fa449fed67d4ce74aada9e503556b591))
- antismash docker call ([2abe262](https://github.com/socialgene/sgnf/commit/2abe262757a5040eebf8dc0c7f659f0f03a7ea7d))

## [0.0.2](https://github.com/socialgene/sgnf/compare/v0.0.1...v0.0.2) (2023-06-16)


### Bug Fixes

* change ncbi-genome-download docker ([295606b](https://github.com/socialgene/sgnf/commit/295606b66ee1ec861ba5eff6c71b6197b5ccdcd4))
* loosen accessory version pins in sgpy base docker ([ca94c3e](https://github.com/socialgene/sgnf/commit/ca94c3ec0cda3556fab7eb7d4cbef58d5b8bfbe8))
* ncbi-genome-download error ([f881373](https://github.com/socialgene/sgnf/commit/f881373cdd1bf3cf68c65cd2962e13e4b82a1834))
* socialgene is now on PyPI ([82af357](https://github.com/socialgene/sgnf/commit/82af3575e07ca8ddd5949640672f6205f74a2402))
- change ncbi-genome-download docker ([295606b](https://github.com/socialgene/sgnf/commit/295606b66ee1ec861ba5eff6c71b6197b5ccdcd4))
- loosen accessory version pins in sgpy base docker ([ca94c3e](https://github.com/socialgene/sgnf/commit/ca94c3ec0cda3556fab7eb7d4cbef58d5b8bfbe8))
- ncbi-genome-download error ([f881373](https://github.com/socialgene/sgnf/commit/f881373cdd1bf3cf68c65cd2962e13e4b82a1834))
- socialgene is now on PyPI ([82af357](https://github.com/socialgene/sgnf/commit/82af3575e07ca8ddd5949640672f6205f74a2402))

## 0.0.1 (2023-06-15)


### Bug Fixes

* fixing lint ([31e4c0f](https://github.com/socialgene/sgnf/commit/31e4c0f1ee608b2216856014b092ef3fc8f1393a))
* reset release please ([b22acbb](https://github.com/socialgene/sgnf/commit/b22acbba3606e3eda124083d048067ed139e2bc8))

- fixing lint ([31e4c0f](https://github.com/socialgene/sgnf/commit/31e4c0f1ee608b2216856014b092ef3fc8f1393a))
- reset release please ([b22acbb](https://github.com/socialgene/sgnf/commit/b22acbba3606e3eda124083d048067ed139e2bc8))

### Miscellaneous Chores

* release 0.0.1 ([9d1cf65](https://github.com/socialgene/sgnf/commit/9d1cf65873f05cbbe7fb00a986780678f5a5d704))
- release 0.0.1 ([9d1cf65](https://github.com/socialgene/sgnf/commit/9d1cf65873f05cbbe7fb00a986780678f5a5d704))
16 changes: 14 additions & 2 deletions nextflow_schema.json
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"description": "File path of a custom HMMER hmm file"
},
"hmmlist": {
"type": "array",
"description": "[\"all\"] or some combination of [\"antismash\",\"amrfinder\",\"bigslice\",\"classiphage\",\"pfam\",\"prism\",\"resfams\",\"tigrfam\",\"virus_orthologous_groups\"]"
"type": "string",
"description": "'all' or some combination of 'antismash', 'amrfinder', 'bigslice', 'classiphage','pfam', 'prism', 'resfams', 'tigrfam', 'virus_orthologous_groups'",
"enum": [
"all",
"antismash",
"amrfinder",
"bigslice",
"classiphage",
"pfam",
"prism",
"resfams",
"tigrfam",
"virus_orthologous_groups"
]
},
"domtblout_path": {
"type": "string",
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4 changes: 1 addition & 3 deletions release-please-config.json
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Expand Up @@ -7,9 +7,7 @@
"bump-patch-for-minor-pre-major": true,
"draft": false,
"prerelease": false,
"extra-files": [
"nextflow.config"
]
"extra-files": ["nextflow.config"]
}
},
"$schema": "https://raw.githubusercontent.com/googleapis/release-please/main/schemas/config.json",
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