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Hi when specifying a --min-length to the assemble workflow to set a minimum ORF length it is used as maximum length as seen here
--min-length
assemble
The output of the extractorfs workflow on commit 53a2eff:
extractorfs
plass assemble tm8_1.truncated.fasta assembly.fas tmp --sub-mat PAM30.out --min-length 10 assemble tm8_1.truncated.fasta assembly.fas tmp --sub-mat PAM30.out --min-length 10
extractorfs /vol/attached/arctic/ORFs/tmp/18009091505483605488/nucl_reads /vol/attached/arctic/ORFs/tmp/18009091505483605488/nucl_6f_start --min-length 20 --max-length 10 --max-gaps 0 --contig-start-mode 1 --contig-end-mode 0 --orf-start-mode 0 --forward-frames 1,2,3 --reverse-frames 1,2,3 --translation-table 1 --use-all-table-starts 0 --id-offset 0 --threads 28 --compressed 0 -v 3
Thanks Antonio
The text was updated successfully, but these errors were encountered:
Fix issues with --min-length #10
4e2fac8
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Hi
when specifying a
--min-length
to theassemble
workflow to set a minimum ORF length it is used as maximum length as seen hereThe output of the
extractorfs
workflow on commit 53a2eff:Thanks
Antonio
The text was updated successfully, but these errors were encountered: