SystemError when gathering I x G p-values

[banskt]

Traceback error message:

Traceback (most recent call last):
  File "codebase/tejaas/bin/../main.py", line 65, in <module>
    jpa.compute()
  File "/home/mpg08/sbanerj/trans-eQTL/codebase/tejaas/qstats/jpa.py", line 118, in compute
    self.mpicompute()
  File "/home/mpg08/sbanerj/trans-eQTL/codebase/tejaas/qstats/jpa.py", line 104, in mpicompute
    pvals   = self.comm.gather(pvals,   root = 0)
  File "MPI/Comm.pyx", line 1281, in mpi4py.MPI.Comm.gather (src/mpi4py.MPI.c:108949)
  File "MPI/msgpickle.pxi", line 664, in mpi4py.MPI.PyMPI_gather (src/mpi4py.MPI.c:47643)
  File "MPI/msgpickle.pxi", line 179, in mpi4py.MPI.Pickle.allocv (src/mpi4py.MPI.c:41800)
  File "MPI/msgpickle.pxi", line 127, in mpi4py.MPI.Pickle.alloc (src/mpi4py.MPI.c:40945)
SystemError: Negative size passed to PyBytes_FromStringAndSize

[banskt]

Likely a 32-bits overflow. Probable solution

[timkartar]

I already found it and was working on it. Although looks like nothing to work on anymore :-)

…

On Mon, Jun 18, 2018 at 8:21 PM, Saikat Banerjee ***@***.***> wrote: Likely a 32-bits overflow. Probable solution <https://groups.google.com/forum/#!topic/mpi4py/r95uGPcqXLA> — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#1 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/APUO1WfM3R3LtyioaE6mGP-uUUewwv-hks5t9--sgaJpZM4UsPpk> .