Skip to content

Polymathix OS v1.0.1: Universal 3D Molecular, Materials Science & AI Co-Pilot Discovery Engine

Choose a tag to compare

View all tags
@sohel3shaikh sohel3shaikh released this 22 Oct 15:30
· 2 commits to master since this release
v1.0.1
ee1a68c

🚀 Polymathix OS v1.0.1 — Universal Computational Intelligence

Polymathix OS v1.0.1 is a major milestone release expanding the autonomous scientific discovery engine across all living kingdoms (Plants & Crops, Animals, Human Therapeutics, Microbial Biocatalysis) and Solid-State Inorganic Materials Science & Nanotechnology.

🌟 What's New in v1.0.1

1. 🔬 Solid-State Materials Science & Inorganic Crystallography Engine

  • Native 3D unit cell coordinate generators and structural analyzers for inorganic lattices:
    • Perovskite ($ ext{SrTiO}_3$): Cubic space group $Pm�ar{3}m$ (221), $a = 3.905 ext{ \AA}$, 12-fold / 6-fold coordination.
    • 2D Graphene Monolayer: $sp^2$ hexagonal planar lattice ($C-C = 1.42 ext{ \AA}$).
    • Carbon Nanotubes ($(5,5) ext{ SWCNT}$): Chiral armchair cylinder with cylindrical coordinate transformation.
    • Anatase $ ext{TiO}_2$ Photocatalyst: Tetragonal coordination with distorted octahedral geometry.
    • Metal-Organic Framework ($ ext{MOF-5}$): Porous coordination network with high internal surface area.
  • Automatic computation of lattice parameters, density, coordination numbers, and pore diameters.

2. 📚 3D Discovery Library Catalog (23+ Pre-Built Systems)

  • Comprehensive curated catalog categorized across 5 discovery sectors:
    • Human Therapeutics: Aspirin, Caffeine, Ibuprofen, Artemisinin, Doxorubicin, Remdesivir.
    • Crop Science & Agriculture: Rubisco Activase, Plant Defensin, Strigolactone, Drought Resilience Factor.
    • Solid-State Materials: $ ext{SrTiO}_3$ Perovskite, Graphene Monolayer, $(5,5) ext{ SWCNT}$, $ ext{TiO}_2$, $ ext{MOF-5}$.
    • Microbial Biocatalysis: PETase Plastic Degrader, Formate Dehydrogenase, Subtilisin.
    • Veterinary Health: Ivermectin Macrocycle, Enrofloxacin, Bravecto Fluralaner.
  • 1-Click Actions: "Load 3D Viewport" and "⚡ Make Novel Variant" live derivatization.

3. 🤖 Multi-LLM 3rd-Party AI Co-Pilot Gateway

  • Plug-and-play API attachment in Settings for leading foundation models:
    • Anthropic Claude (Claude 3.5 Sonnet / Opus)
    • OpenAI ChatGPT (GPT-4o / o1)
    • xAI Grok (Grok-2 / Grok-Mini)
    • Moonshot Kimi (Moonshot-v1)
    • Zhipu GLM-4
    • Google Gemini (Gemini 1.5 Pro)
    • Local Ollama (100% offline, zero-cloud privacy)
  • Built-in autonomous zero-key fallback with deterministic chemistry reasoning.

4. ⚡ Real-Time Conversational AI & Structure Mutation

  • Real-time conversational bubbles in the top navigation bar and full-screen AI chat modal.
  • Natural language prompt execution: e.g., "Synthesize 5-fluoro-aspirin" triggers real-time RDKit molecular derivatization, SMILES conversion, MMFF94 force-field geometry optimization, and direct 3D coordinate injection into the viewport.

5. 🎯 Universal 3D Viewport & 100% Progress Convergence

  • Added universal Three.js coordinate mapping and auto-scaling for all molecules and crystal lattices (resolving blank-viewport conditions).
  • Eliminated the 83% bottleneck — simulations now converge smoothly from Step 1 through Step 6 to 100% Finalized.

🧪 Automated Quality & Test Verification

All 15 / 15 automated verification tests pass cleanly:

python scripts/test_all.py
# VERIFICATION SUMMARY: 15 PASSED, 0 FAILED

🎬 Quick Start (Run Locally in 3 Steps)

# 1. Clone the repository
git clone https://github.com/sohel3shaikh/Polymathix.git
cd Polymathix

# 2. Install dependencies
pip install -r requirements.txt

# 3. Launch Polymathix OS
python -m streamlit run app.py

Open your browser at http://localhost:8501.

📦 Release Assets

  • Polymathix-Master-Release.zip: Complete offline standalone release archive.
  • Polymathix_Showcase_Demo.mp4: High-definition (1080p/720p) video walkthrough and feature demonstration.
Assets 5
Loading