Skip to content

An easy way to normalize CT values to Internal controls as well as housekeeping genes and download as heatmap.

Notifications You must be signed in to change notification settings

srinew/qPCR-Norm

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

13 Commits
 
 
 
 
 
 
 
 

Repository files navigation

Plot and download qPCR normalized heatmap by uploading a GeneXSample raw CT value .csv file

Link to app: https://svnallan.shinyapps.io/heatmap_shiny/

Sample Annotations:

First row is Sample IDs for header, second row for sample annotations e.g Tumor, Normal which will annotate the heatmap. Gene annotations (first column) are always followed by Control samples first e.g

Column1: Gene symbols

Column2: Control1

Column3: Control2

Column4: Tumor1

Column5: Tumor2

Gene Annotations:

First column is gene symbols/identifiers, cannot be duplicates. Housekeeping genes can be selected manually e.g ACTB, GAPDH, TUBB.

Normalization:

log2(2^(-ddCT)+1)

About

An easy way to normalize CT values to Internal controls as well as housekeeping genes and download as heatmap.

Topics

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages