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README.md

Staphopia Analysis Pipeline

Staphopia's analysis pipeline is primarily written in Python. There are however a few programs written in C++.

Installation

Fresh Ubuntu Server 14.04

Tool Directory Overview

The tool directory houses a large number of the Staphopia dependencies. Below is a list of of the included source/linux binary files. Links to both the tool website and the download link originally used retrieve the file are included. Each of the included files are unmodified and arte only included to reduce the total number of downloads.

Tools

Python Modules python-modules

Contact

robert.petit@emory.edu