caMicroscope

A Web Based Annotation and Visualization Platform for Digitized Whole Slide Images

Develop branch build status:

About

caMicroscope is a HTML5 image viewer optimized for large bio-medical image data viewing, with a strong emphasis on cancer pathology.

The Image Viewer server is based on IIPImage server which is a Fast CGI module and OpenSeaDragon which is a deep zoom image viewer.

Usage

caMicroscope should be deployed as part of a stack; for further information see the caMicroscope distribution repository.

To use caMicroscope as a standalone application, see nanoborb.

Core Features

• Variable resolution browser rendering of slide images of multiple formats

• Segmentation analysis on user-selected regions

• Annotation drawing and sharing