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Dbg2olc #73

Merged
merged 198 commits into from
Mar 29, 2024
Merged

Dbg2olc #73

merged 198 commits into from
Mar 29, 2024

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HWsunqian0027
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mari-ga and others added 30 commits March 18, 2024 10:31
* changes to cellhashr

* yaml file for scsplit

* out cellhashr folder

* Lint fix

* fix lint

* fix lint

* corrections for lint

* fixes lowercase

* scsplit out

* scsplit back

* change to link

* fixes
Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
* Update rnachipintegrator to 3.0.0

* rnachipintegrator: add missing 'run_exports' statements required by linter.

---------

Co-authored-by: Peter Briggs <peter.briggs@manchester.ac.uk>
Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
* fix busco patch

* increment build number
* Update checkqc to 4.0.1

* add python to run deps as package is noarch:python

---------

Co-authored-by: mencian <joshua.zhuang@yahoo.com>
* muscle: add linux-aarch64 build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Bump muscle to 5.1.0

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Add support for Linux ARM64

rcedgar/muscle#73

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
* linux-aarch64 build for alcor

* linux-aarch64 build for alcor

* linux-aarch64 build for alcor

* linux-aarch64 build for alcor
* linux-aarch64 build for ac

* linux-aarch64 build for ac
* Update r-azimuth to 0.5.0

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

---------

Co-authored-by: Christian Brueffer <christian@brueffer.io>
Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
* Update psm-utils to 0.7.4

* reset build number

---------

Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
Co-authored-by: mencian <joshua.zhuang@yahoo.com>
BiocondaBot and others added 28 commits March 25, 2024 13:58
* Update bioconda-utils to 2.13.0

* update requirements to match bioconda-utils repo

---------

Co-authored-by: aliciaaevans <alicia.evans@nih.gov>
* linux-aarch64 build for alignstats

* linux-aarch64 build for alignstats

* Update meta.yaml

---------

Co-authored-by: yejianbang <yjb_kunpeng@163.com>
Co-authored-by: yejianbang <145335562+yejianbang@users.noreply.github.com>
* Update condiga to 0.2.2

* add run_exports

---------

Co-authored-by: mencian <joshua.zhuang@yahoo.com>
* Update anvio-minimal to 8

* Update anvio-minimal to 8

* add run_exports

* edit dependencies

* Update anvio-minimal to 8

* Update anvio-minimal to 8

* Update anvio-minimal to 8

* add multiprocess

* add rich-argparse

---------

Co-authored-by: joshuazhuang7 <joshua.zhuang@yahoo.com>
Co-authored-by: Thanh Lee <thanh.le-viet@quadram.ac.uk>
Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
* Update hapog to 1.3.8

* add zlib

---------

Co-authored-by: mencian <joshua.zhuang@yahoo.com>
* Update magus-msa to 0.2.0

* edit tests

* edit tests

---------

Co-authored-by: mencian <joshua.zhuang@yahoo.com>
* Update treeqmc to 3.0.1

* Update treeqmc to 3.0.3

* update meta.yaml

* add recipe to blacklist

---------

Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
Co-authored-by: mencian <joshua.zhuang@yahoo.com>
Co-authored-by: Robert A. Petit III <robbie.petit@gmail.com>
* remove specific cpu flag

* bump build number

---------

Co-authored-by: mencian <joshua.zhuang@yahoo.com>
* Update gmap to 2024.03.15

* edit build.sh

* revert to skipping OSX & enable aarch64 build

* revert to linux only
* update build recipe

* specify current version
* raxml: add linux-aarch64 build

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* Disable the tests which are x86_64/AVX specific

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>

* try build selector

* try build selector

---------

Signed-off-by: Martin Tzvetanov Grigorov <mgrigorov@apache.org>
Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
* wfa2-lib: enable linux-aarch64 build

* edit build.sh

* edit build.sh

* edit build.sh

* edit build.sh

* edit build.sh
* tabixpp: enable linux-aarch64 build

* try without patch

* try without patch 2
@sunqian2116 sunqian2116 merged commit 2372db7 into sunqian2116:dbg2olc Mar 29, 2024
@sunqian2116
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