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@tahiri-lab

tahiri-lab

Theoretical and Algorithmic Hybrid Interactive Reticulogram Interpretation (Tahiri)

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  1. aPhyloGeo aPhyloGeo Public

    aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.

    Python 10 7

  2. aPhyloGeo-pipeline aPhyloGeo-pipeline Public

    Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree

    Python 7

  3. GPTree GPTree Public

    This generator can be used to generate a specified number of phylogenetic trees (or clusters of trees in the cluster version) in Newick format with a variable number of leaves and with some level o…

    Jupyter Notebook 2

  4. phyDBSCAN phyDBSCAN Public

    phyDBSCAN: Building alternative phylogenetic trees using DBSCAN and Robinson and Foulds distance

    C++ 2

  5. ClonalTreeClustering ClonalTreeClustering Public

    B-cell lymphocyte clustering project

    C++ 2

  6. iPhyloGeo iPhyloGeo Public

    Python 1 3

Repositories

Showing 10 of 25 repositories
  • scipy_proceedings_2024 Public Forked from scipy-conference/scipy_proceedings

    Tools used to generate the SciPy conference proceedings

    tahiri-lab/scipy_proceedings_2024’s past year of commit activity
    Python 0 530 0 0 Updated Nov 1, 2024
  • Cumacea_aPhyloGeo Public
    tahiri-lab/Cumacea_aPhyloGeo’s past year of commit activity
    Python 0 0 0 0 Updated Nov 1, 2024
  • py_madaclim Public

    A simple Python API to interact with the Madaclim database

    tahiri-lab/py_madaclim’s past year of commit activity
    Python 1 MIT 1 0 0 Updated Oct 31, 2024
  • aPhyloGeo Public

    aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.

    tahiri-lab/aPhyloGeo’s past year of commit activity
    Python 10 7 3 0 Updated Oct 26, 2024
  • KNCL Public

    A solution designed to complete 2 phylogenetic trees defined on different but mutually overlapping sets of taxa on the union of their taxa sets and compute the Branch Score Distance between the completed phylogenetic trees.

    tahiri-lab/KNCL’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Oct 25, 2024
  • PrimConsTree Public
    tahiri-lab/PrimConsTree’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 14, 2024
  • GPTree Public

    This generator can be used to generate a specified number of phylogenetic trees (or clusters of trees in the cluster version) in Newick format with a variable number of leaves and with some level of overlap between trees in clusters.

    tahiri-lab/GPTree’s past year of commit activity
    Jupyter Notebook 2 MIT 0 0 1 Updated Sep 9, 2024
  • phyTransformer Public

    phyTransformer

    tahiri-lab/phyTransformer’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 21, 2024
  • ClonalTreeClustering Public

    B-cell lymphocyte clustering project

    tahiri-lab/ClonalTreeClustering’s past year of commit activity
    C++ 2 0 0 0 Updated Aug 20, 2024
  • iPhyloGeo Public
    tahiri-lab/iPhyloGeo’s past year of commit activity
    Python 1 3 0 0 Updated Aug 13, 2024
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