Network meta-analysis for DTA in adults with NAFLD

Overview

This repository contains a minimal set of R codes to reproduce our analyses shown in the paper:

Yamaguchi, R., Oda, T. & Nagashima, K. Comparison of the diagnostic accuracy of shear wave elastography with transient elastography in adult nonalcoholic fatty liver disease: a systematic review and network meta-analysis of diagnostic test accuracy. Abdom Radiol (2024). https://doi.org/10.1007/s00261-024-04546-8

Stan codes for the separate MA model, the main NMA model, the simpler model, and the inconsistency model,
R codes to fit those models with particular options and values for the function arguments to reproduce the results written in the paper,
the raw data that we used in the R codes and that includes study characteristics,
the data used for the inconsistency model,
the data shows a list of studies with a flag of inclusion for MA and NMA, and
a set of renv files to be used to restore the package environment.

Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
renv		renv
.Rprofile		.Rprofile
.gitignore		.gitignore
DTANMA_NAFLDNASH.Rproj		DTANMA_NAFLDNASH.Rproj
NMAIncludedStudies.csv		NMAIncludedStudies.csv
NMA_data_inconsistency.xlsx		NMA_data_inconsistency.xlsx
NMA_data_supp.xlsx		NMA_data_supp.xlsx
NMA_fit_main_inconsistency_supp.R		NMA_fit_main_inconsistency_supp.R
NMA_fit_main_supp.R		NMA_fit_main_supp.R
README.md		README.md
SeparateMA_fit_supp.R		SeparateMA_fit_supp.R
create_datasets_supp.R		create_datasets_supp.R
ma_fit_supp.stan		ma_fit_supp.stan
nma_fit_main_inconsistency_supp.stan		nma_fit_main_inconsistency_supp.stan
nma_fit_main_supp.stan		nma_fit_main_supp.stan
nma_fit_sub_supp.stan		nma_fit_sub_supp.stan
renv.lock		renv.lock