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This repository has been archived by the owner on Sep 30, 2021. It is now read-only.
INFO: -: Running validation from cBioPortal version 0-unknown-version-SNAPSHOT
DEBUG: -: Requesting cancertypes from portal at 'http://cbioportal-container:8080/cbioportal'
DEBUG: -: Requesting genes from portal at 'http://cbioportal-container:8080/cbioportal'
DEBUG: -: Requesting genesaliases from portal at 'http://cbioportal-container:8080/cbioportal'
DEBUG: -: Requesting genesets from portal at 'http://cbioportal-container:8080/cbioportal'
DEBUG: meta_study.txt: Starting validation of meta file
INFO: meta_study.txt: Validation of meta file complete
DEBUG: meta_fusion.txt: Starting validation of meta file
INFO: meta_fusion.txt: Validation of meta file complete
DEBUG: meta_mutation_file.txt: Starting validation of meta file
INFO: meta_mutation_file.txt: Validation of meta file complete
DEBUG: meta_clinical_sample.txt: Starting validation of meta file
INFO: meta_clinical_sample.txt: Validation of meta file complete
DEBUG: meta_clinical_patient.txt: Starting validation of meta file
INFO: meta_clinical_patient.txt: Validation of meta file complete
ERROR: -: **Cancer type of study is neither known to the portal nor defined in a cancer_type file; value encountered: 'mixed**'
It is weird that I was able to upload the exact same data set with mixed cancer type and now it says that "Cancer type of study is neither known to the portal nor defined in a cancer_type file"
The text was updated successfully, but these errors were encountered:
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Hi
I am trying to import data into cbioportal and my command is this:
I encounter the following error:
my
meta_study.txt
file looks like this:It is weird that I was able to upload the exact same data set with
mixed
cancer type and now it says that "Cancer type of study is neither known to the portal nor defined in a cancer_type file"The text was updated successfully, but these errors were encountered: