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@thepanlab

the PAN lab

The Parallel computing, Artificial intelligence, and Network science (PAN) Lab in the School of Computer Science and the Dept. of Microbiology and Plant Biology

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  1. Seq2MAG Seq2MAG Public

    Metagenomics workflow from sequencing data to Metagenome-Assembled Genomes (MAGs)

    Python 8 2

  2. Sipros4 Sipros4 Public

    Sipros for stable isotopic mass spectrum meta proteomic

    C 7 1

  3. Supercomputing_Instructions Supercomputing_Instructions Public

    Useful information to use the supercomputers

    Shell 4 4

  4. LINA LINA Public

    Jupyter Notebook 3

  5. NACHOS NACHOS Public

    Pipeline to process images with CNN: NACHOS and DACHOS. From the paper under writing "Integration of nested cross-validation, automated hyperparameter optimization, high-performance computing to re…

    Python 2

  6. GattacaNet2 GattacaNet2 Public

    Jupyter Notebook 1 1

Repositories

Showing 10 of 29 repositories
  • NACHOS Public

    Pipeline to process images with CNN: NACHOS and DACHOS. From the paper under writing "Integration of nested cross-validation, automated hyperparameter optimization, high-performance computing to reduce and quantify the variance of test performance estimation of deep learning models"

    thepanlab/NACHOS’s past year of commit activity
    Python 2 MIT 0 5 0 Updated Feb 14, 2025
  • NPHVI Public
    thepanlab/NPHVI’s past year of commit activity
    Python 0 0 0 0 Updated Jan 25, 2025
  • ProStoichiometric Public
    thepanlab/ProStoichiometric’s past year of commit activity
    MATLAB 0 0 0 0 Updated Jan 1, 2025
  • Sipros4 Public

    Sipros for stable isotopic mass spectrum meta proteomic

    thepanlab/Sipros4’s past year of commit activity
    C 7 MIT 1 3 0 Updated Oct 30, 2024
  • paper-redaction-guidelines Public

    This repository will compile all tools that are useful to write a paper.

    thepanlab/paper-redaction-guidelines’s past year of commit activity
    0 0 0 0 Updated Sep 13, 2024
  • Endoscopic_OCT_PCN_guidance Public

    Scripts used for an upcoming paper "Percutaneous Nephrostomy Guidance by a Convolutional-Neural-Network-Based Endoscopic Optical Coherence Tomography System"

    thepanlab/Endoscopic_OCT_PCN_guidance’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 12, 2024
  • prb_guidance_paper Public

    The code for paper "Automatic renal carcinoma biopsy guidance using forward-viewing endoscopic optical coherence tomography and deep learning"

    thepanlab/prb_guidance_paper’s past year of commit activity
    Python 0 0 0 0 Updated Aug 7, 2024
  • Supercomputing_Instructions Public

    Useful information to use the supercomputers

    thepanlab/Supercomputing_Instructions’s past year of commit activity
    Shell 4 4 0 0 Updated May 31, 2024
  • smoking_cessation_intervention_messages Public

    Scripts for paper "Towards AI-Driven Healthcare: Systematic Optimization, Linguistic Analysis, and Clinicians’ Evaluation of Large Language Models for Smoking Cessation Interventions"

    thepanlab/smoking_cessation_intervention_messages’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 20, 2024
  • WetlandSoil Public

    Stoichiometric model and scripts used in wetland soil project

    thepanlab/WetlandSoil’s past year of commit activity
    MATLAB 0 0 0 0 Updated Dec 30, 2023
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