R package 'junctions'
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DESCRIPTION
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README.md

junctions

Individual based simulations of hybridizing populations, where the accumulation of junctions is tracked. Furthermore, mathematical equations are provided to verify simulation outcomes. Both simulations and mathematical equations are based on Janzen et al. (2018)

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references

Janzen, T. , Nolte, A. W. and Traulsen, A. (2018), The breakdown of genomic ancestry blocks in hybrid lineages given a finite number of recombination sites. Evolution, 72: 735-750. https://doi.org/10.1111/evo.13436

Updates

Version 1.2: Added support for estimating the expected number of junctions for arbitrarily distributed markers.

Version 1.1: Updated random number generation for picking recombination sites. Previous implementation was limited to 6 digit precision, current precision is at least double that, minimizing the probability of recombination occur twice in the same location for an infinite chromosome.