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Timp Lab

Timp Lab @ JHU

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  1. nanopore-methylation-utilities nanopore-methylation-utilities Public

    Python 29 9

  2. nanoNOMe nanoNOMe Public

    nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis

    Python 17 5

  3. Cas9Enrichment Cas9Enrichment Public

    scripts for analysis associated with Cas9Enrichment publication

    Shell 12 2

  4. T2T-Epigenetics T2T-Epigenetics Public

    Repository for analysis scripts for the T2T Epigenetics manuscript

    HTML 7 1

  5. timp_nanoporesv timp_nanoporesv Public

    Code supplement for Norris et al. paper on structural variation detection with

    Python 6

  6. Telomere_Length Telomere_Length Public

    This repository contains the pipeline for assessing telomere length from "Chromosome specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing"

    R 5 1

Repositories

Showing 10 of 35 repositories
  • dam_mutagensis_chemistry Public
    timplab/dam_mutagensis_chemistry’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 4, 2024
  • bcmb_bootcamp Public

    Repo for BCMB Computational Bootcamp Course

    timplab/bcmb_bootcamp’s past year of commit activity
    Jupyter Notebook 2 15 0 0 Updated Sep 2, 2024
  • grossman_prolificans Public

    genome assembly of Lomentospora prolificans

    timplab/grossman_prolificans’s past year of commit activity
    Shell 0 0 0 0 Updated Jul 1, 2024
  • fan_methylation_binning Public

    Code used for methylation binning paper

    timplab/fan_methylation_binning’s past year of commit activity
    R 0 0 0 0 Updated Apr 14, 2024
  • Zuniga_Aikin_2024_ERK Public

    Code for processing of RNA-seq data from "Sustained ERK Signaling Promotes G2 Cell Cycle Exit and primes cells for Whole Genome Duplication" Zuniga, Aikin, et al. (2024)

    timplab/Zuniga_Aikin_2024_ERK’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Mar 18, 2024
  • tague_splitcre Public

    All code for preprocessing sequencing data for split cre screen

    timplab/tague_splitcre’s past year of commit activity
    Shell 0 0 0 0 Updated May 3, 2023
  • nanoNOMe Public

    nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis

    timplab/nanoNOMe’s past year of commit activity
    Python 17 5 1 0 Updated Nov 18, 2022
  • hg002_chrY_methylation Public

    Code for analysis of methylation on HG002 chrY

    timplab/hg002_chrY_methylation’s past year of commit activity
    Python 0 0 0 0 Updated Oct 25, 2022
  • Telomere_Length Public

    This repository contains the pipeline for assessing telomere length from "Chromosome specific telomere lengths and the minimal functional telomere revealed by nanopore sequencing"

    timplab/Telomere_Length’s past year of commit activity
    R 5 1 0 0 Updated Feb 8, 2022
  • Drug_resistant_GBM Public

    FLAIR and SUPPA2 analysis for "Targeting destabilized DNA g-quadruplexes and aberrant splicing in amyloid-like aggregate positive drug-resistant glioblastoma"

    timplab/Drug_resistant_GBM’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Feb 2, 2022
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