Three R scripts for gene-related data conversion and annotation
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Updated
Dec 17, 2023 - R
Three R scripts for gene-related data conversion and annotation
An R package for downloading the data for, creating, and querying a database of PubTator annotation files.
neoBattenberg diploma thesis project for fixing and extending original Battenberg R package for subclonal copynumber estimation.
Scripts to handle with transcript annotation reports.
Pi-S Treatment RNA-seq
Genomic regions (e.g ChIPseq peaks) annotation with TxDB object
Preprocessing, variants tools for RNA-seq, ChIP-seq analysis
Alternative splicing annotation for AnnotationHub
Regularly updated version of `org.At.tair.db`.
Batch annotation and visualization of the peaks identified from ChIP-seq, ChIP-chip, ATAC-seq experiments or any experiments resulted in large number of chromosome ranges
An R package to help manage the Case Studies in the `throughputdb` repository.
Genomic annotation for Pseudomonas aeruginosa str. PAO1, assembly ASM676v1.
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
This is the repository of the pipeline META-DIFF, which detects sequences in differential abundances between two conditions, and annotates them taxonomicaly and functionaly.
SMP: A Salmonella Methylation analysis Pipeline
A semi-automatic coronavirus genome annotation tool
Alternative splicing event annotation for Human assembly (hg19)
Rapid, accurate annotations of Plasmids from Illumina NGS reads
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