Scripts for .bed file genomic region annotation with various tools
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Updated
Oct 11, 2017 - R
Scripts for .bed file genomic region annotation with various tools
An R package to help manage the Case Studies in the `throughputdb` repository.
Preprocessing, variants tools for RNA-seq, ChIP-seq analysis
Scripts for the complete analysis pipeline: 1) generation of the count table; 2) annotation of the count-table and differential gene expression analysis; 3) Weighted Gene Coexpression Network Analysis; and, 4) the functional annotation (hypergeometric test) of the hits.
De nove assembly and annotation of Fragilaria radians transcriptome
Regularly updated version of `org.At.tair.db`.
Rapid, accurate annotations of Plasmids from Illumina NGS reads
An R package for downloading the data for, creating, and querying a database of PubTator annotation files.
R script which can label relationships in a pedigree
seq2Fun provides function to annotate protein or coding sequences with KEGG pathways
Pi-S Treatment RNA-seq
Takes output from DMRichR and performs statistical testing and visualization for CpG and genic annotation enrichments
App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0
A semi-automatic coronavirus genome annotation tool
Batch annotation and visualization of the peaks identified from ChIP-seq, ChIP-chip, ATAC-seq experiments or any experiments resulted in large number of chromosome ranges
Alternative splicing event annotation for Human assembly (hg19)
Alternative splicing event annotation for Human assembly (hg38)
MORFEE: Mutation on Open Reading FramE annotation
SMP: A Salmonella Methylation analysis Pipeline
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