Quickstart to Bioinformatics & Biomedical AI.
-
Updated
Jun 26, 2024 - Python
Quickstart to Bioinformatics & Biomedical AI.
Research release basecalling models and configurations
A PyTorch Basecaller for Oxford Nanopore Reads
Methylation/modified base calling separated from basecalling.
modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data
Benchmarking several NVIDIA GPUs with dorado
Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by anchoring the information rich basecalling neural network output to a reference genome/transriptome.
snakemake workflow for basecalling and demultiplexing of ONT sequencing data
Nanopore direct RNA basecaller
Novel basecaller, jointly processing raw and event data from ONT nanopore, basec on encoder-decoder + attention architecture
Add a description, image, and links to the basecalling topic page so that developers can more easily learn about it.
To associate your repository with the basecalling topic, visit your repo's landing page and select "manage topics."