Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
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Updated
May 19, 2024 - Python
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
VariantCaller is a wrapper for the 2022 gatk & bcftools best practices + phasing with WhatsHap.
The main aim of this little project is to compare the European allele frequencies of the 1k genomes project with the gnomad frequencies.
Convert SV VCFs to BED, a wrapper for bcftools query
a tool for quickly getting the correct bcftools command
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
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