Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
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Updated
Jan 17, 2024 - Shell
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Analysis pipeline for processing paired-end Illumina reads obtained after ancient mtDNA target enrichment capture.
A Nextflow variant normalization pipeline based on vt and bcftools
Scripts used on a cluster that demonstrate vcf file manipulation and preparation.
A collection of scripts for filtering annotated variant call format files
This script filters false positive alleles from poolseq VCF file created with bcftools.
convert genotype array output into annotated IBD segments
This repository contains code related to a conservation genomics project focused on the king rail, a threatened marsh bird.
Merge in parallel, speeding up bcftools merge
This repository outlines steps to manage VCF files, including compressing, indexing, querying chromosomes, counting variants, and comparing multiple VCF files using BCFTools.
1,674 S.cerevisiae genomics data
bcftools singularity container
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