bash based pangenome assembly from short and long reads
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Updated
Sep 12, 2024 - Shell
bash based pangenome assembly from short and long reads
A repository to create automations that download external datasets
Shell script to sort .gtf files
Scripts to download the PacBio, ONT and MiSeq datasets used in https://www.nature.com/articles/s41598-017-03996-z and run the pipelines as described in the paper or simply download the final assemblies as generated by the authors.
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