ATAC-seq and DNase-seq processing pipeline
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Updated
Jun 21, 2022 - Python
ATAC-seq and DNase-seq processing pipeline
A tool to circularize genome assemblies
Antimicrobial Resistance Identification By Assembly
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Package for fetching metadata and downloading data from SRA/ENA/GEO
WGBS/NOMe-seq Data Processing & Differential Methylation Analysis
A bioinformatics pipeline to analyze mtDNA from NGS data
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Snakemake profile for running jobs on an LSF cluster
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
The SpeciesPrimer pipeline is intended to help researchers finding specific primer pairs for the detection and quantification of bacterial species in complex ecosystems.
de novo virus assembler of Illumina paired reads
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
HemTools: a collection of NGS pipelines and bioinformatic analyses
A fully automated gene annotator from RNA-Seq expression data
Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
My daily notebook on bioinformatic data analysis and machine learning
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