A comprehensive classification tool based on pure transcriptomics for precision medicine
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Updated
Jul 3, 2024 - R
A comprehensive classification tool based on pure transcriptomics for precision medicine
Cancer Predisposition Sequencing Reporter (CPSR)
Crossmapped phenotype ontologies for the oncology domain
Contains code related to my multi-omics integration project at WEHI.
Human gene annotations for the oncology domain
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
Functions and data relevant to the tutorials published on the WeChat official account MedBioInfoCloud are encapsulated in this R package.
Bioconductor R-package: Curated Prostate Cancer Data
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis
Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice
Two-parameter Bayesian logistic dose-escalation model to find the maximum tolerated dose (MTD) of HTL0039732 agent alone and in combination with a backbone agent in patients with solid tumours.
Implements four major subtype classifiers for high-grade serous (HGS) ovarian cancer.
Set of standardized functions to operate with genomic data
Robust Decision Making Tools for Cancer Screening Models
Supplementary R scripts for the manuscript "Disrupting PGE2/EP3 signaling in cancer-associated fibroblasts limits mammary carcinoma growth but promotes metastasis"
Endoscopic and Pathological data extraction for various endo-pathological data extraction
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