Topological data analysis for Comparative Genomics
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Updated
May 27, 2024 - Python
Topological data analysis for Comparative Genomics
AMRFinderPlus-Matrix contains script for processing the output files of AMRFinderPlus and generating a binary matrix that shows the presence or absence of antibiotic resistance genes, stress response genes, and virulence genes in each sample.
basic visualization of hmm profile matches to multiple fasta files
Assemblies, MATA/MATB regions and source data from Peris et al 2022
Génomique Comparée (Cours M2 AMI2B Paris-Saclay)
Calculates pairwise pocp values from proteinortho5 results.
"IDOPS IDentification of Pesticidal Proteins", a profile HMM-based tool to detect pesticidal sequences and compare their genetic context
Génomique comparative entre 3 génomes d'Enterococcus Cecorum
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
Structural variant calling and functional annotation in five mice lines selected for specific traits and a control line.
A genome diagram generator for microbes
Implements methods and scripts to compute a structure matrix from a multiple sequence alignment. Th
Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho
Tools for performing I-ADHoRe co-linearity inference and visualization
NASA GeneLab Open API
Code associé à un article dans Linux Magazine n°212 février 2018
A pipeline to construct phylogenetic tree using BUSCOs
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