This repository contains all the codes for graphical and numerical characterisation of nucleotide and amino acid sequences based on Nandy-graphical system for allotting coordinate axes to the nucleotide bases or amino acids. The repository also contains code to determine the solvent accessibility and degree of conservation for every 12-length co…

CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Parser that reassembles sequence from NetSurfp csv output file.

Knowles Lab Research: determine which genetic variants cause a phenotype with non-binary functional annotations

A collection of Python scripts useful for biological research

Micelle Maker source code

Routine computations in regression

A Python script to filter and extract information from GTF files based on chromosome names, designed to be easily accessible for biologists without extensive programming experience.

Search, retrieve, and scrape biological data from annotated genomes or public databases.

Models and data analysis created for bioinformatics research focusing on early-trimester detection for complications of pregnancy. The dataset used is publicly available from the Gene Expression Omnibus under the accession number GSE154377.

ChIPseq pipeline for Pasini's lab written in snakemake

Analysis of CRISPR self-targeting spacers

Protein Secondary Structure similarity via machine learning

Data challenge to predict the binding nature of DNA sequence regions to specific transcription factors, using kernel methods

My rosalind.info answers

Computational Biology with ODEs

RNA-Seq Pipeline for processing paired-end FASTQ transcripts generated from Illumina sequencing. The pipeline trims adapter sequences, aligns transcripts to a specified region of interest on the reference genome, and facilitates downstream analysis.

Characterizing Hydropathy of Amino Acid Side Chain in a Protein Environment by Investigating the Structural Changes of Water Molecules Network

LAM is a quantitative phenotyping tool intended for regionally defined analysis of Drosophila midguts based on objects detected from microscopy images.