R package to provide gene transfer format files from commonly investigated model organisms in ChIP-seq studies

Python Version of CERENKOV paper (ACM-BCB 2017)

ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps

Database of pairwise consensuses for miR-mRNA target interactions

Interactive web app to compute and display statistics for genomes or DNA sequences of different organisms

This repository contains scripts and results for my group in the 2016-2017 Computational Biology class offered jointly through the Maine School of Science and Mathematics (my high school) and the Jackson Laboratories. This research project uses a mouse intercross provided by the Attie Labratory at the University of Wisconsin - Madison. We are us…

R Shiny web application for aging-related diseases

Jackson Labs Summer Student Program 2018, Bar Harbor, ME. Statistically analyzing the effect of genetic diversity on the aging heart. Final paper: https://docs.google.com/document/d/1rkDRjnS6XhkFGk6EpzB4V24XqJdfN_JaM4vh5cc3iBA/edit

An RNA-sequencing experiment to identify effects of mutations in glucose-limited environments in S. Cerevisiae

Biplots, Volcano plots, PCA plots, Heatmaps and more Computational Genomics data created and visualized during University of Pittsburgh course, Computational Biology (BIOSC1540), with Dr. Miler Lee

A technical biomedical informatics and computational biology knowledge base commons

Enhancing Boolean networks with continuous logical operators and edge tuning: smoothing simulations

TCR Enrichment Analysis (TEA) Webtool

2016 Sigma factor network in M. tuberculosis | https://jananiravi.github.io/publication/2016/natcomm/

geneXtendeR analysis on 547 ENCODE ChIP-seq datasets for both proximal and distal transcription factor (TF) binding peaks for all cell types

geneXtendeR analysis on 198 human histone modification ChIP-seq ENCODE datasets

R/Bioconductor package for optimized functional annotation of ChIP-seq data

Creating a classifier for bladder cancer using Elastic Net Regression

R package with common use scripts for transcriptomics analysis