GenePattern module which implements the batch correction algorithm within Seurat.

Regehr, E. V., N. J. Hostetter, R. R. Wilson, K. D. Rode, M. S. Martin, and S. J. Converse. 2018. Integrated Population Modeling Provides the First Empirical Estimates of Vital Rates and Abundance for Polar Bears in the Chukchi Sea. Scientific Reports 8:16780.

Forked repository of STATegRa package in Bioconductor

Sorel MH, JC Jorgensen, RW Zabel, MD Scheuerell, AR Murdoch, CM Kamphaus, SJ Converse. 2023. Incorporating life history diversity in an integrated population model to inform viability analysis. Canadian Journal of Fisheries and Aquatic Sciences.

Sipe H, IN Keren, and SJ Converse. 2023. Integrating community science and agency-collected monitoring data to expand monitoring capacity at large spatial scales. Ecology and Evolution.

Multi-omics analysis of LFQ proteomics and transcriptomics of an ALMS1 gene knockout cell model after TGF-B pathway stimulation.

🌲 Integrating Sample Similarity Information into Latent Class Models: A Tree-Structured Shrinkage Approach

Using three different datasets, obtained from three different places we built a dashboard that could be helpful for different people to identify what is the relationship between poverty (measured by the Multidimensional Poverty Index), communes, house pricing.

Sorel MH, RW Zabel, DS Johnson, AM Wargo Rub, and SJ Converse. 2021. Estimating population-specific predation effects on Chinook salmon via data integration. Journal of Applied Ecology 58:372-381.

Probabilistic OPLS discriminant analysis

Saunders, S.P., Farr, M.T., Wright, A.D., Bahlai, C.A., Ribeiro, J.W., Rossman, S., Sussman, A.L., Arnold, T.W., & Zipkin, E.F. 2019. Disentangling data discrepancies and deficiencies with integrated population models. Ecology 100(6): e02714.

multimedia is an R package for multimodal mediation analysis of microbiome data. It has been designed to help integration of relative abundance, survey, and metabolomic data through causal mediation analysis.

R package for finding a joint low-rank representation for a collection of matrices with shared row or column entities.

Improved plotting outputs for mixOmics models, using `ggplot2`

integrated chemical-property-values from many source databases.

A statistical approach for meta-analyzing adjusted and unadjusted estimates from epidemiological cohorts/studies.

R package for integrative analysis of several related data matrices

TDI Capstone Project

CHIP-seq and RNA-seq integration tutorial

Integrating pathways and related knowledge in a multilayer framework