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deseq2

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bissessk / RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells

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Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

linux unix bioinformatics rna-seq r hpc rstudio ngs next-generation-sequencing bioinformatics-pipeline rnaseq deseq2 rna-sequencing salmon rna-seq-analysis rna-seq-data ngs-analysis rna-seq-pipeline salmon-deseq2 tximport
  • Updated Aug 28, 2020
  • Shell

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