These are tutorials on a subset of tools available for processing raw RNAseq data. This if for HISAT2_SAMtools_Stringtie_gffcompare_ballgown pipeline or HISAT2_SAMtools_Stringtie_PrepDEanalysis.py_DESeq2 pipeline
Complete Pipeline for RNA-seq data analysis: From FastQ to differntial gene expression to annotated Variations.
DEMUX, ALIGN, DESEQ2 DGE CALLS
Bioinformatic scripts for working on the UiO Abel compute cluster
Workshops, Course Schedule and Teaching Assistant Review from my time as a chosen Undergraduate Teaching Assistant for the University of Pittsburgh course, BIOSC1540 - Computational Genomics taught by Dr. Miler Lee.
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