python pipeline for dwi processing and analysis
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Updated
May 30, 2024 - Python
python pipeline for dwi processing and analysis
White Matter Analysis Pipeline (WMAP)
Automated quality control tools for diffusion MRI data
Tractometry-based metrics for characterizing white matter lesions within fibre pathways
Extension for 3D slicer that provides a module and a python package for fiber clustering and tractography analysis.
Multi-usage python library for processing and modeling of diffusion MRI images. For pipelining tools, see mrHARDIflow at https://github.com/AlexVCaron/mrHARDIflow.
The basic structural and diffusion MRI registration with pre-processing pipeline in Python.
A tool for extracting diffusion-based brain connectivity
Calculate b-value images from two or more other b-value images using a monoexponential model (for prostate mpMRI).
Streamline Tractography Utilities for Deep Learning
Magnetic Resonance Imaging data processing pipelines with a strong emphasis on the diffusion weighted MRI (DWI) modality and tractogram estimation
Reproducible and efficient diffusion kurtosis imaging in Python.
Official repository for "FD-Net: An Unsupervised Deep Forward-Distortion Model for Susceptibility Artifact Correction in EPI"
Code for paper "Diffusion Deep Learning for Brain Age Prediction and Longitudinal Tracking in Children through Adulthood
Diffusion fiber tract classification using deep learning
implements Freesurfer's TRACULA (TRActs Constrained by UnderLying Anatomy) tool for cross-sectional as well as longitudinal (multi session) input data.
Package facilitating the tracking of sub-cortical U-Fibers
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