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fastq-files

Here are 5 public repositories matching this topic...

pentalpha / sickle

Parallel Windowed Adaptive Trimming for fastq files using quality

bioinformatics rna-seq parallel parallel-computing parallelism performance-tuning trimming fastq parallel-programming fastq-files

Updated Oct 17, 2019
C++

pentalpha / luthien

Super ultra-fast fastq preprocessor, using parallel windowed adaptive trimming.

bioinformatics rna-seq parallel parallel-computing parallelism concurrent-programming rnaseq trimming fastq parallel-programming fastq-files bioinfo quality-score fastq-processing

Updated Oct 28, 2019
C++

DKFZ-ODCF / FastqIndEx

A tool to index and extract data from gzipped FASTQ files

stream gzip zlib ngs extraction indexing index fastq random-access reads fastq-files

Updated Dec 9, 2021
C++

cartoonist / kseqpp

Fast FASTA/Q parser and writer (C++ re-implementation of kseq library)

parser writer fasta fastq fastq-files fasta-files

Updated Mar 4, 2024
C++

refresh-bio / colord

A versatile compressor of third generation sequencing reads.

bioinformatics compression genomics sequencing oxford-nanopore long-reads fastq-files pac-bio

Updated Mar 24, 2024
C++

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