Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
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Updated
Jan 17, 2022 - Nextflow
Proof of concept of a SRA to trimmed FASTQ (including quality control) pipeline with Nextflow
A containerized nextflow pipeline designed to annotate prokaryote genomes.
Filter fastq file based on bed regions
Detect iSNV and construct whole viral genomes from metagenomic samples
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxa to identify (and remove) are Homo and Homo sapiens. Removal is optional.
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