SCAVENGE is a method to optimize the inference of functional and genetic associations to specific cells at single-cell resolution.

Fine-mapping pipeline in R: FINEMAP, CAVIAR, PAINTOR, GCTA-COJO, ABF

Create LocusZoom-style plots in R.

Multple methods for BSA Pipeline

Shiny app for plotting and sharing fine-mapping results from echolocatoR

DeepGWAS: Enhance GWAS Signals for Neuropsychiatric Disorders via Deep Neural Network

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

MGflashfm: joint fine-mapping of genetic association signals in several traits amongst multiple population groups.

Flashfm: multi-trait fine-mapping that uses GWAS summary statistics from several traits. Updated and more flexible wrapper functions available at jennasimit.github.io/flashfmZero/

echoverse module: Annotate fine-mapping results

Generating a weighed average of LDSTORE matrices for locus-based fine-mapping.

echoverse module: Example data.

Multi-trait fine-mapping for any number of uncorrelated traits (and limited number of correlated traits)