Basic seed-and-extend DNA sequence read aligner
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Updated
Jul 12, 2018 - C++
Basic seed-and-extend DNA sequence read aligner
Highly optimized Burrow-Wheeler Aligner specifically for Illumina ~150 bp short-read alignment.
fast classification of metagenomic sequences with lightweight de Bruijin graph-based reference indexing
Algorihms about Suffix Array Construction, Suffix Tree, Longest Common Prefix, Burrows Wheeler Transform,
Wavelet tree based on a fixed block boosting technique
Wavelet Matrix/Tree succinct data structure for full text search (based on shellinford C++ library)
The Modular Aligner and The Modular SV Caller
Succinct Data Structure Library 3.0
Sequence Indexing and Search
The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.
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