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freebayes

Here are 3 public repositories matching this topic...

USDA-VS / vSNP

vSNP -- validate SNPs

bam-files snps pipeline genomics vcf phylogenetics snp wgs high-throughput-sequencing high tuberculosis whole-genome-sequencing analysis-pipeline mycobacterium-tuberculosis-complex brucella freebayes

Updated Nov 21, 2022
Python

USDA-VS / vSNP3

vSNP -- validate SNPs

bam-files snps pipeline genomics phylogenetics influenza wgs high-throughput-sequencing bwa-mem tuberculosis whole-genome-sequencing analysis-pipeline vcf-files mycobacterium-bovis mycobacterium-tuberculosis-complex mycobacterium-bovis-af2122 brucella freebayes sars-cov-2

Updated May 9, 2024
Python

CarolinaPB / WUR_mapping-variant-calling

Short read mapping and variant calling

snakemake pipeline mapping variant-calling freebayes short-reads snakemake-pipeline

Updated Mar 1, 2022
Python

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