A useful python package for working on genomic coordinates.
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Updated
Feb 25, 2021 - Python
A useful python package for working on genomic coordinates.
Generate heatmap plots from genomic BigWig data
Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.
App to identify if a given DNA sequence is present in a viral genome repository. If found, it also gives the location and the protein it was a part of.
Some snippet of code related to bioinformatics
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
protein-annotator python package for analyzing protein alignments to draft genomes.
a genome reference estimation based on the peak size calibration coming from the flow cytometry
ease of access gff files from tair for reading tair ids.
Viral genome assemble and characterisation
Archived code for analyses in "Extensive phylogenomic discordance and the complex evolutionary history of the Neotropical cat genus Leopardus" (Lescroart et al. 2023, MBE)
easing your access to arabidopsis tair
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle
genome annotation analyzer for the microbiome analysis
intergenic region analyzer from protein alignments to draft genomes.
analyzer for phytozome gff files and pacid for genes.
A Simple and Flexible Test of Sample Exchangeability with Applications to Statistical Genomics
戊糖乳杆菌泛基因组分析 | Pan-genome analysis of Lactobacillus Pentosus
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