Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
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Updated
Mar 7, 2024 - C++
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
R code in R Markdown used for ucm genomes and genome analysis course
estimating the genome size from illumina genome-seq and plotting the genome size.
A useful python package for working on genomic coordinates.
This code compares the theoretical and practical length distributions of fragments.
MAGset is a tool to analyze and compare MAGs of known species
A human-first SV annotation snakemake pipeline based on nanotatoR working with optical mapping (Bionano Genomics) data
MRA, A Novel Multi-head Algorithm to Discover all Tandem Repeats in One Scan of DNA Sequences.
Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.
Create a Bioconductor/R SDK for Arvados
App to identify if a given DNA sequence is present in a viral genome repository. If found, it also gives the location and the protein it was a part of.
Analysis of input alphabet sequential data
Raw data and code for the Genomic Analysis of Singles and Pools (GASP) project - https://doi.org/10.1099/mgen.0.001111
Optimal AlphaMissense threshold based on VKGL variant classifications
A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.
Java Clients for the Regulatory Sequence Analysis Tools (RSAT) REST API
The genome of the contractile demosponge Tethya wilhelma
Some snippet of code related to bioinformatics
Analysis of drought metagenomic data using ENNB methods
Front-end for views and tables in web interface
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