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genome-on-diet

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CMU-SAFARI / Genome-on-Diet

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Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).

bioinformatics genomics metagenomics variant-calling containment-search genome-analysis large-scale sequence-alignment read-mapping metagenomic-analysis microbiome-analysis minimap2 wavefront-alignment genome-on-diet
  • Updated Sep 28, 2023
  • Roff

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