iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
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Updated
Jun 22, 2018 - Python
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
A metabolic modeling workflow for communities of organisms in an nasal medium.
Trim, extract, and convert GEMs
Collection of scripts to collect data from databases such as BRENDA, BiGG, and the chemical translation service, and update a model of CHO-K1 growth.
Programming interface to resource allocation modelling with the Resource Balance Analysis (RBA) method. This is version 1.0.3
Designing microbial communities
mergem is a python package and command-line tool for merging, comparing, and translating genome-scale metabolic models
SMETANA: a tool to analyse interactions in microbial communities
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
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