Mycobacterial pipeline
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Updated
Jul 17, 2024 - Python
Mycobacterial pipeline
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
OpenLMIS v3+ Reference Distribution. Last mile health commodity information system.
A tool to circularize genome assemblies
This project explores the potential relationship between continental eating habits and diabetes mortality rates worldwide. Utilizing data scraped from three web sources, I conducted a detailed analysis that includes visualizing dietary patterns, correlating average caloric intake by continent, and examining diabetes-related death statistics.
Antimicrobial Resistance Identification By Assembly
repository containing code for the Virtual Student Federal Service (VSFS) Indian Health Service indigenous data science internship
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics
Multi-stage hierarchical estimation of disease processes on demographic observations
Python3 scripts to manipulate FASTA and FASTQ files
de novo virus assembler of Illumina paired reads
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Assembling the cause of phenotypes and genotypes from NGS data
Predict plasmids from uncorrected long read data
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
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