Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
-
Updated
Mar 5, 2018 - C++
Calculate SMD and Hamming and Jaccard distances between each pair of samples in a set of variant files.
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
A Novel Computational Method Based on Genetic Algorithms for Haplotype Assembly
PBWT-based algorithm for identifying all Maximal Perfect Haplotype Blocks with Wildcards
Bayesian haplotype-based mutation calling
Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
Create a set of reference-guided multiple-aligned haplotypes or founder sequences from a variant call file and a reference sequence.
Add a description, image, and links to the haplotypes topic page so that developers can more easily learn about it.
To associate your repository with the haplotypes topic, visit your repo's landing page and select "manage topics."